Bio7

The application Bio7 is an integrated development environment for ecological modelling with a main focus on individual based modelling and spatially explicit models.
The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.

Features

Embedds several tools for:

- Creation and analysis of spatial explicit simulation models.
- Statistical analysis (R).
- Spatial statistics (possibility to send values from a specialized panel to R).
- Image Analysis (embedded ImageJ).
- Fast communication between R and Java (with RServe) and
   the possibilty to use R methods inside Java.
- Interpretation of Java and script creation (with BeanShell).
- Direct compilation of Java (Janino).
- Creation of methods for Java, BeanShell and R
   (integrated editors for Java, R, BeanShell).
- Sensitivity analysis with an embedded flowchart editor in which
  scripts, macros and compiled code can be dragged and executed.
- Creation of 3d OpenGL (Jogl) models.

The application is developed by the Department of Experimental and Systems Ecology

Contact:
Dipl. Biol. Marcel Austenfeld
Prof. Dr. Wolfram Beyschlag

 The chair of experimental and systems ecology

 

News:

03.11.2008
Bio7 1.3 released!
For information about this
release please read the news
on the Nabble forum of Bio7.
Instantiations

11.07.2008
Bio7 1.2 Linux released!
For information about this
release please read the news
on the SourceForge page
or the Nabble forum of Bio7.

20.05.08
Bio7 1.2 released!
For information about this
release please read the news
on the SourceForge page
or the Nabble forum of Bio7.


17.05.08
New Flash tutorials!
Three new Flash tutorials are
available for Bio7 1.2.

26.10.07
Shapefile exporter script released!
The shapefile exporter
script creates a shapefile
out of multiple ImageJ selections (ROI Manager) and is able to export a dataframe too which all can be loaded in a Gis software.
For more information about this read the news on the SourceForge page or on the Nabble forum of Bio7.

14.10.07
New Flash tutorials
created!
Five new Flash tutorials
are available!

13.10.07
Bio7 Linux released!
A beta version of Bio7
for Linux has been released.
For information about this
release please read the news
on the SourceForge page
or the Nabble forum of Bio7.

09.09.2007
Bio7 1.1 available!
A new version of Bio7
is available!
For information about this
release please read the news
on the SourceForge page
or the Nabble forum of Bio7.

30.07.07
Bio7 released!
The Windows version
of Bio7 has been released.
The Linux version will follow
soon!