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  • RNA Biology and Molecular Physiology

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Arribas-Hernández L, Rennie S, Köster T, Porcelli C, Lewinski M, Staiger D, Andersson R, Brodersen P (2021)
Principles of mRNA targeting via the Arabidopsis m6A-binding protein ECT2.
eLife, doi:10.7554/eLife.72375.

Johansson M, Takata N, Ibanez C, Eriksson ME (2022)
Monitoring Seasonal Bud Set, Bud Burst, and Cold Hardiness in Populus.
in: Plant Circadian Networks, Methods and Protocols, 2nd Edition; Methods in Molecular Biology, vol. 2398, 215-226; doi:10.1007/978-1-0716-1912-4;
Eds.: Staiger D, Davis S, Davis AM.
[Methods in Molecular Biology]

Johansson M, Ibanez C, Takata N, Eriksson ME (2022)
The Perennial Clock Is an Essential Timer for Seasonal Growth Events and Cold Hardiness.
in: Plant Circadian Networks, Methods and Protocols, 2nd Edition; Methods in Molecular Biology, vol. 2398, 227-242; doi:10.1007/978-1-0716-1912-4;
Eds.: Staiger D, Davis S, Davis AM.
[Methods in Molecular Biology]

Zhang R, Kuo R, Coulter M, Calixto CPG, Entizne JC, Guo W, Marquez Y, Milne L, Riegler S, Matsui A, Tanaka M, Harvey S, Yubang G, Wiebner-Kroh T, Crespi M, Denby K, ben Hur A, Huq E, Jantsch MF, Jarmolowski A, Koester T, Laubinger S, Li QQ, Gu L, Seki M, Staiger D, Sunkar R, Szweykowska-Kulinska Z, Tu SL, Wachter A, Waugh R, Xiong L, Zhang XN, Reddy ASN, Barta A, Kalyna M, Brown JWS (2021)
A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis.
BioRxiv, doi:10.1101/2021.09.02.458763.

Staiger D (2021)
Das Immunsystem der Pflanze in einem Akt.
Biologie in unserer Zeit 51 (3), 225-226.
[Biologie in unserer Zeit]

Arribas-Hernández L, Rennie S, Köster T, Schon M, Porcelli C, Lewinski M, Enugutti B, Nodine M, Staiger D, Andersson R, Brodersen P (2021)
Principles of mRNA targeting and regulation via the Arabidopsis m6A-binding proteins ECT2 and ECT3.
BioRxiv, doi:10.1101/2021.04.18.440342.

Hafner M, Katsantoni M, Köster T, Marks J, Mukherjee J, Staiger D, Ule J, Zavolan M (2021)
CLIP and complementary methods.
Nature Reviews Methods Primers 1, 20, doi:10.1038/s43586-021-00018-1.
[Nat Rev Methods Primers]

Köster T, Staiger D (2021)
RNA-binding protein immunoprecipitation and high throughput sequencing.
Arabidopsis Protocols 4th edition, 453-461, doi: 10.1007/978-1-0716-0880-7_23.
[Arabidopsis Protocols]

Staiger D (2020)
In the heat of the day – RNA als Temperaturfühler.
Biologie in unserer Zeit 50(5). 306-307.
[Biologie in unserer Zeit]

Staiger D (2020)
Proteins on the move.
Biologie in unserer Zeit 50(4). 231-232.
[Biologie in unserer Zeit]

Köster T, Reichel M, Staiger D (2020)
CLIP and RNA interactome studies to unravel genome-wide RNA-protein interactions in vivo in Arabidopsis thaliana.
Methods 178: 63-71, doi: 10.1016/j.ymeth.2019.09.005.

Lewinski M, Bramkamp Y, Köster T, Staiger D (2020)
SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework.
BMC Bioinformatics 21, 113, doi: 0.1186/s12859-020-3434-9.
[BMC Bioinformatics]

Wang L, Yang T, Wang B, Lin Q, Zhu S, Li C, Ma Y, Tang J, Xing J, Li X, Liao H, Staiger D, Hu Z, Yu F (2020)
RALF1-FERONIA Complex Impacts Splicing Dynamics to Modulate Stress Responses and Growth in Plants.
Science Advances 6, doi: 10.1126/sciadv.aaz1622.
[Science Advances]

Köster T, Staiger D (2020)
Plant individual resolution crosslinking and immunoprecipitation to characterize RNA-protein complexes.
Methods in Molecular Biology “RNA tagging”, 2166, 255-267

Begger JH, Steffen A, Nolding J, Staiger D (2020)
Ohne die innere Uhr keine Blüte: Die Wirkung der Tageslänge auf den Blühbeginn der Pflanzen.
BU praktisch - Das Online-Journal für den Biologieunterricht 3(2), doi: 10.4119/bupraktisch-3360.
[BU praktisch]

Lewinski M, Bramkamp Y, Köster T, Staiger D (2019)
SEQing: web-based visualization of Arabidopsis thaliana iCLIP and RNA-seq data in an interactive python framework.
bioRxiv, doi: 10.1101/2019.12.17.865873.

Clemens S, Staiger D (2019)
GBM-Studiengruppe „Biochemie und Molekularbiologie der Pflanzen“ – Aktivitäten.
Bio Spektrum 4/2019, 448.
[BioSpektrum 4/2019]

Reichel M, Köster T, Staiger D (2019)
m6A writers, readers and functions in Arabidopsis.
Journal of Molecular Cell Biology, mjz085, doi:10.1093/jmcb/mjz085.
[Journal of Molecular Cell Biology]

Szakonyi D, Confraria A, Valerio C, Duque P, Staiger D (2019)
Editorial: Plant RNA Biology. Frontiers in Plant Science, section Plant Cell Biology, doi: 10.3389/fpls.2019.00887.
[Frontiers in Plant Science]

Steffen A, Elgner M, Staiger D (2019)
Regulation Of Flowering Time By The RNA-binding Proteins AtGRP7 And AtGRP8.
Plant and Cell Physiology, pcz124, doi: 10.1093/pcp/pcz124.
[Plant and Cell Physiology].

Schiessl S, Williams N, Specht P, Staiger D, Johansson M (2019)
Different copies of SENSITIVITY TO RED LIGHT REDUCED 1 show strong subfunctionalization in Brassica napus.
BMC Plant Biology 19(1):372. doi: 10.1186/s12870-019-1973-x.
[BMC Plant Biology]

Chaudhary S, Jabre I, Reddy ASN, Staiger D, Syed NH (2019)
Perspective on alternative splicing and proteome complexity in plants.
Trends in Plant Science 24(6), 496-506. doi:10.1016/j.tplants.2019.02.006.
[Trends in Plant Science]

Staiger D, Weber APM (2019)
Molecular mechanisms of plant acclimation to changing environments.
Plant Biology 21(1), 3-5, doi:10.1111/plb.12933.
[Plant Biology]

Johansson M, Köster T (2019)
On the move through time - a historical review of plant clock research.
Plant Biology 21(1), 13-20, doi:10.1111/plb.127.
[Plant Biology]

Mateos JL, de Leone MJ, Torchio J, Reichel M, Staiger D (2018)
Beyond transcription – fine tuning of circadian timekeeping by posttranscriptional regulation.
Genes 2018, 9(12), 616, doi:10.3390/genes9120616.
[Genes 2018]

Lewinski M, Köster T (2018)
Systems approaches to map in vivo RNA-protein interactions in Arabidopsis thaliana.
Systems Biology, RNA Technologies, eds.: Rajewsky, Nikolaus; Jurga, Stefan; Barciszewski, Jan; doi:10.1007/978-3-319-92967-5_5.
[Systems Biology]

Staiger D (2018)
Wie der Mensch das Tomaten-Metabolom verändert.
Biologie in unserer Zeit 48(4). 213-214.
[Biologie in unserer Zeit]

Edwards KD, Takata N, Johansson M, Jurca M, Novák O, Hényková E, Liverani S, Kozarewa I, Strnad M, Millar AJ, Ljung K, Eriksson ME (2018)
Circadian clock components control daily growth activities by modulating cytokinin levels and cell division-associated gene expression in Populus trees.
Plant Cell Environment 41(6), 1468-1482.
[Plant Cell Environment]

Köster T, Meyer K (2018)
Plant Ribonomics: Proteins in Search of RNA Partners.
Trends Plant Science 23(4), 352-365.
[Trends Plant Science]

Köster T (2018)
miRNAs – der Hacker‐Angriff der Parasiten.
Biologie in unserer Zeit 48(2), 87-88.
[Biologie in unserer Zeit]

Bekiaris PS, Tekath T, Staiger D, Danisman S (2018)
Computational exploration of cis-regulatory modules in rhythmic expression data using the "Exploration of Distinctive CREs and CRMs" (EDCC) and "CRM Network Generator" (CNG) programs.
PLoS One 13(1):e0190421.
[PLoS One]

Meyer K*, Köster T*, Nolte C, Weinholdt C, Lewinski M, Grosse I, Staiger D (2017)
Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7.
*joint first authors
Genome Biology 18(1), 204.
[Genome Biology]

see also:


Staiger D (2017)
Nobelpreis für die Innere Uhr.
Biologie in unserer Zeit 47(6), 352-354.
[Biologie in unserer Zeit]

Köster T (2017)
Volkszählung in der Zelle – wer bindet RNA?
Biologie in unserer Zeit 47(4), 226-227.
[Biologie in unserer Zeit]

Staiger D (2017)
Phytochrom als Thermometer: The heat is on.
Biologie in unserer Zeit 47(3), 152-153.
[Biologie in unserer Zeit]

Steffen A, Staiger D (2017)
Chromatin marks and ambient temperature-dependent flowering strike up a novel liaison.
Genome Biology 18, doi: 10.1186/s13059-017-1259-2.
[Genome Biology]

Foley SW, Gosai SJ, Wang D, Selamoglu N, Sollitti AC, Köster T, Steffen A, Lyons E, Daldal F, Garcia BA, Staiger D, Deal RB, Gregory BD (2017)
A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate.
Developmental Cell 41, 204-220.
[Developmental Cell]

see also:


Köster T, Marondedze C, Meyer K, Staiger D (2017)
RNA-Binding Proteins Revisited - The Emerging Arabidopsis mRNA Interactome.
Trends Plant Science 22, 512-526
[Trends in Plant Science]

Trends in Plant Science, Issue June 2017

Jung C, Pillen K, Staiger D, Coupland G, von Korff M (2017)
Editorial: Recent Advances in Flowering Time Control.
Frontiers in Plant Science 7, 2011.
[Frontiers in Plant Science]

Staiger D (2017)
Die Sonnenblume - eine Sonnenuhr.
Biologie in unserer Zeit 47(1), 12-13.
[Biologie in unserer Zeit]

Wagner L, Schmal C, Staiger D, Danisman S (2017)
The plant leaf movement analyzer (PALMA): a simple tool for the analysis of periodic cotyledon and leaf movement in Arabidopsis thaliana.
Plant Methods 13, 2.
[Plant Methods]

Danisman S (2016)
TCP Transcription Factors at the Interface between Environmental Challenges and the Plant’s Growth Responses.
Frontiers in Plant Science 7, 1930.
[Frontiers in Plant Science]

Staiger D (2016)
Schlechte Zeiten für akute myeloische Leukämie.
Biologie in unserer Zeit 46, 275-277.
[Biologie in unserer Zeit]

Staiger D (2016)
Bei Kulturpflanzen der Tomate geht die innere Uhr nach.
Biologie in unserer Zeit 46, 145-146.
[Biologie in unserer Zeit]

Simpson CG, Fuller J, Calixto CPG, McNicol J, Booth C, Brown JWS, Staiger D (2016)
Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes.
Methods Mol Biol 1398, 119-132.
[Methods Mol Biol]

Staiger D (2016)
Warum Pflanzen und Säugetiere ähnlich ticken.
Biologie in unserer Zeit 46, 14-15.
[Biologie in unserer Zeit]

Lewinski M, Hallmann A, Staiger D (2016)
Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues.
Mol Genet Genomics 291, 763-773.
[Mol Genet Genomics]

Meyer K, Staiger D (2015)
Das Leitgewebe gibt den Takt an.
Biologie in unserer Zeit 45, 246-252.
[Biologie in unserer Zeit]

Meyer K, Köster T, Staiger D (2015)
Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process.
Biomolecules 5, 1717-1740.

Danisman S, Mateos J, Staiger D (2015)
Time to network: The molecular blueprint of the circadian timing system in plants.
Rhythms in Plants, 257-276.
[Rhythms in Plants]

Johansson M, Ramos-Sánchez JM, Conde D, Ibánez C, Takata N, Allona I, Eriksson ME (2015)
Role of the Circadian Clock in Cold Acclimation and Winter Dormancy in Perennial Plants.
Advances in Plant Dormancy, 51-74.
[Advances in Plant Dormancy]

Staiger D, Simpson GG (2015)
Enter exitrons.
Genome Biology 16, 136.
[Genome Biology]

Nolte C, Staiger D (2015)
RNA around the clock - regulation at the RNA level in biological timing.
Frontiers in Plant Science 6, 311.
[Front Plant Sci]

Staiger D (2015)
Shaping the Arabidopsis Transcriptome through Alternative Splicing.
Advances in Botany , doi: 10.1155/2015/419428.
[Advances in Botany]

Johansson M, Staiger D (2015)
Time to flower: interplay between photoperiod and the circadian clock.
Journal of Experimental Botany 66, 719-730.
[Journal of Experimental Botany]

Hennig S, van de Linde S, Lummer M, Simonis M, Huser T, Sauer M (2015)
Instant live-cell super-resolution imaging of cellular structures by nanoinjection of fluorescent probes.
Nano Letters 15(2), 1374-81.
[Nano Letters]

Humpert F, Yahiatène I, Lummer M, Sauer M, Huser T (2015)
Quantifying molecular colocalization in live cell fluorescence microscopy.
J Biophotonics 8(1-2), 124-32.

Leder V, Lummer M, Tegeler K, Humpert F, Lewinski M, Schuettpelz M (2014)
Mutational definition of binding requirements of an hnRNP-like protein in Arabidopsis using fluorescence correlation spectroscopy.
Biochemical and Biophysical Research Communications 453, 69-74.
[Biochem Biophys Res Commun]

Johansson M, Staiger D (2014)
SRR1 is essential to repress flowering in non-inductive conditions in Arabidopsis thaliana.
Journal of Experimental Botany 65, 5811-5822.
[Journal of Experimental Botany]

Köster T, Meyer K, Weinholdt C, Smith LS, Lummer M, Speth C, Grosse I, Weigel D, Staiger D (2014) Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis.
Nucleic Acids Research 42, 9925-9936.
[Nucleic Acids Research]

Staiger D (2014)
Chloroplasten abgehört - retrograde Signale diktieren alternatives Spleißen.
Biologie in unserer Zeit 44, 220-221.
[Biologie in Unserer Zeit]

Korneli C, Danisman S, Staiger D (2014)
Differential Control Of Pre-Invasive And Post-Invasive Antibacterial Defense By The Arabidopsis Circadian Clock.
Plant Cell Physiol . 55, 1613-1622.
[Plant Cell Physiol]

Köster T, Haas M, Staiger D (2014)
The RIPper Case: Identification of RNA-Binding Protein Targets by RNA Immunoprecipitation.
Methods Mol Biol 1158, 107-121.
[Methods Mol Biol.]

Johansson M, Ibáñez C, Takata N, Eriksson ME (2014)
The perennial clock is an essential timer for seasonal growth events and cold hardiness.
Methods Mol Biol 1158, 297–311.
[Methods Mol Biol.]

Johansson M, Takata N, Ibáñez C, Eriksson ME (2014)
Monitoring seasonal bud set, bud burst, and cold hardiness in Populus.
Methods Mol Biol 1158, 313–324.
[Methods Mol Biol.]

Steffen A, Fischer A, Staiger D (2014)
Determination of photoperiodic flowering time control in Arabidopsis and barley.
Methods Mol Biol 1158, 285-295.
[Methods Mol Biol.]

Staiger D (Ed) (2014)
Plant Circadian Networks.
Methods Mol Biol 1158.
[Methods Mol Biol.]

Andriankaja ME*, Danisman S*, Mignolet-Spruyt LF, Claeys H, Kochanke I, Vermeersch M, De Milde L, De Bodt S, Storme V, Skirycz A, Maurer F, Bauer P, Mühlenbock P, Van Breusegem F, Angenent GC, Immink RG, Inzé D (2014)
Transcriptional coordination between leaf cell differentiation and chloroplast development established by TCP20 and the subgroup Ib bHLH transcription factors.
*joint first authors
Plant Molecular Biology 85, 233-245.
[Plant Molecular Biology]

Hackmann C*, Korneli C*, Kutyniok M, Köster T, Wiedenlübbert M, Müller C, Staiger D (2014)
Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity.
*joint first authors
Plant, Cell & Environment 37, 696-706.
[Plant, Cell & Environment]

Löhr B, Streitner C, Steffen A, Lange T, Staiger D (2014)
A glycine-rich RNA-binding protein affects gibberellin biosynthesis in Arabidopsis.
Molecular Biology Reports 41, 439-445.
[Molecular Biology Reports]

Köster T, Staiger D (2014)
RNA-binding protein immunoprecipitation from whole-cell extracts.
Methods Mol Biol 1062, 679-95.
[Methods Mol Biol.]

Staiger D, Brown JWS (2013)
Alternative Splicing at the Intersection of Biological Timing, Development, and Stress Responses.
Plant Cell 10, 3640-3656.
[Plant Cell]

see also:

Staiger D, Hammann C (2013)
Nachlese zur Frühjahrsakademie der Gesellschaft für Genetik.
Bio Spektrum 19, 672.

Danisman S, van Dijk AD, Bimbo A, van der Wal F, Hennig L, de Folter S, Angenent GC, Immink RG (2013)
Analysis of functional redundancies within the Arabidopsis TCP transcription factor family by a combination of classical genetic and bioinformatics approaches.
Journal of Experimental Botany 64, 5673-5685.
[Journal of Experimental Botany]

Staiger D, Shin J, Johansson M, Davis SJ (2013)
The circadian clock goes genomic.
Genome Biology 14, 208.
[Genome Biology]

see also:

Lummer M, Humpert F, Wiedenlübbert M, Sauer M, Schüttpelz M, Staiger D (2013)
A new set of reversibly photoswitchable fluorescent proteins for use in transgenic plants.
Molecular Plant6, 1518-1530.
[Molecular Plant]

Schmal C, Reimann P, Staiger D (2013)
A Circadian Clock-Regulated Toggle Switch Explains AtGRP7 and AtGRP8 Oscillations in Arabidopsis thaliana .
PLoS Comput Biol 9, e1002986.
[PLoS Computat Biol]

Nicaise V, Joe A, Jeong B, Korneli C, Boutrot F, Wested I, Staiger D, Alfano JR, Zipfel C (2013)
Pseudomonas HopU1 Affects Interaction of Plant Immune Receptor mRNAs to the RNA-Binding Protein GRP7.
EMBO J 32, 701-712.
see also:

Staiger D, Korneli C, Lummer M, Navarro L (2013)
Emerging role for RNA-based regulation in plant immunity.
New Phytologist197, 394-404 .
[New Phytologist]

Streitner C, Köster T, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D  (2012)
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with target transcripts in Arabidopsis thaliana.
Nucleic Acids Research 40, 11240-11255.
[Nucleic Acids Reasearch]

Baerenfaller K, Bastow R, Beynon J, Brady S, Brendel V, Donaldson S, Dooley R, Forster M, Friesner J, Gifford D, Grotewold E, Gutierrez R, Huala E, Jaiswal P, Joshi H, Kersey P, Liu L, Loraine A, Lyons E, May S, Mayer K, MacLean D, Meyers B, Mueller L, Muller R, Muller HM, Ouellette F, Pires JC, Provart N, Staiger D, Stanzione D, Taylor J, Taylor C, Town C, Toyoda T , Vaughn M, Walsh S, Ware D, Weckwerth W (2012)
Taking the Next Step: Building an Arabidopsis Information Portal.
Plant Cell 24, 2248-2256.
[Plant Cell]

Danisman S, van der Wal F, Dhondt S, Waites R, de Folter S, Bimbo A, van Dijk AJ, Muino JM, Cutri L, Dornelas MC, Angenent GC, Immink RG (2012)
Arabidopsis Class I and Class II TCP Transcription Factors Regulate Jasmonic Acid Metabolism and Leaf Development Antagonistically.
Plant Physiol 159, 1511-23.
[Plant Physiol]

Lummer M, Humpert F, Steuwe C, Caesar K, Schüttpelz M, Sauer M, Staiger D (2011)
Reversible photoswitchable DRONPA-s monitors nucleocytoplasmic transport of an RNA-binding protein in transgenic plants.
Traffic 12, 693–702. doi: 10.1111/j.1600-0854.2011.01180.x

Jeong B, Lin Y, Joe A, Guo M, Korneli C, Yang H, Wang P, Yu M, Cerny R, Staiger D, Alfano J, Xu Y (2011)
Structure function analysis of an ADP-ribosyltransferase Type III Effector and its RNA-Binding Target in Plant Immunity.
J Biol Chem 286, 43272. doi: 10.1074/jbc.M111.290122

Staiger D, Green R (2011)
RNA-based regulation in the plant circadian clock.
Trends Plant Sci 16, 517-523. doi: 10.1016/j.tplants.2011.06.002

Pietsch D, Bernát G, Kahmann U, Staiger D, Pistorius EK, Michel KP (2011)
New insights into the function of the iron deficiency-induced protein C from Synechococcus elongatus PCC 7942.
Photosynthesis research 108, 121-132. doi: 10.1007/s11120-011-9661-1

Staiger D, Köster T (2011)
Spotlight on post-transcriptional control in the circadian system.
Cell Mol Life Sci 68, 71-83. doi: 10.1007/s00018-010-0513-5

Streitner C, Hennnig L, Korneli C, Staiger D (2010)
Global transcript profiling of transgenic plants constitutivelyoverexpressing the RNA-binding protein AtGRP7.
BMC Plant Biology 10, 221. doi: 10.1186/1471-2229-10-221
[BMC Plant Biology]

Schmidt F, Marnef A, Cheung MK, Wilson I, Hancock J, Staiger D, Ladomery M (2010)
A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8.
Mol Biol Rep 37, 839-845. doi: 10.1007/s11033-009-9636-x

Hühns M, Neumann K, Hausmann T, Klemke F, Lockau W, Kahmann U, Kopertekh L, Staiger D, Pistorius EK, Reuther J, Waldvogel E, Wohlleben W, Martin M, Junghans H, Neubauer K, Kragl U, Schmidt K, Schmidtke J, Broer I (2009)
Tuber-specific cphA expression to enhance cyanophycin production in potatoes.
Plant Biotechnology Journal 7, 883-898. doi: 10.1111/j.1467-7652.2009.00451.x

Staiger D, Köster T (2009)
Timing is everything - Die Innere Uhr der Pflanzen.
Labor & More 5, 40-41.

Lummer M, Schüttpelz M, Sauer M, Staiger D (2009)
RNA-Protein-Interaktion im Rampenlicht.
BIOforum 6, 28-30.

Fuhrmann A, Schöning JC, Anselmetti D, Staiger D, Ros R (2009)
Quantitative analysis of single molecule RNA-protein interaction.
Biophysical J 96, 5030-5039. doi: 10.1016/j.bpj.2009.03.022

Michel K-P, Schröder A-K, Zimmermann M, Brandt S, Pistorius EK, Frankenberg-Dinkel N, Staiger D (2009)
The hybrid histidine kinase Hik14 of the cyanobacterium Synechocystis sp. PCC 6803 contains FAD as a cofactor at its PAS domain.
Archives of Microbiology 191, 553-559. doi: 10.1007/s00203-009-0483-x

Schriek S, Kahmann U, Staiger D, Pistorius EK, Michel K-P (2009)
Detection of an L-amino acid dehydrogenase activity in Synechocystis sp. PCC 6803
J Experimental Botany 60, 1035-1046. doi: 10.1093/jxb/ern352

Streitner C, Danisman S, Wehrle F, Schöning, JC, Alfano JR, Staiger D (2008)
The small glycine-rich RNA-binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana.
Plant J 56, 239-250. doi: 10.1111/j.1365-313X.2008.03591.x

Schöning JC, Streitner C, Meyer IM, Gao Y, Staiger D (2008)
Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.
Nucleic Acids Res, 6977-6987. doi: 10.1093/nar/gkn847

Staiger D, Streitner C, Lummer M, Schöning JC, Alfano J (2008)
RNA-binding proteins as mediators of circadian clock output in Arabidopsis thaliana.
Comparative Biochemistry and Physiology, Molecular & Integrative Physiology 150, S152-153. doi: 10.1098/rstb.2001.0964

Schüttpelz M Schöning JC, Doose S, Neuweiler H, Peters E, Staiger D, Sauer M (2008)
Changes of conformational dynamics of mRNA upon AtGRP7 binding studied by fluorescence correlation spectroscopy
J Am Chem Soc 130, 9507–9513. doi: 10.1021/ja801994z

Schöning JC, Staiger D (2008)
RNA-protein interaction mediating post-transcriptional regulation in the circadian system.
Methods in Molecular Biology 479, 337-51. doi: 10.1007/978-1-59745-289-2_21

Schriek S, von Wösener EA, Ibelings BW, Nodop A, Becker A, Staiger D, Matthijs HCP, Pistorius E, Michel KP (2008)
Transcript profiling indicates that the absence of PsbO affects the coordination of C and N metabolism in Synechocystis sp PCC 6803.
Physiol Plantarum 133,  525-543. doi: 10.1111/j.1399-3054.2008.01119.x

Hühns M, Neumann K, Ziegler K, Kahmann U, Staiger D, Lockau W, Pistorius EK, Broer I (2008)
Targeting of the cyanophycin synthetase into plastids of Nicotiana tabacum leads to high levels of polymer accumulation without adverse effects on the phenotype.
Plant Biotechnology Journal 6, 321-336. doi: 10.1111/j.1467-7652.2007.00320.x

Staiger D (2008)
Light and plant development, Annual Plant Reviews, Volume 30.
Annals of Botany, 480-481. doi: 10.1093/aob/mcm309

Fuhrmann A, Schöning JC, Getfert S, Eckel R, Reimann P, Anselmetti D, Staiger D, Ros R (2007)
Single molecule protien-RNA interactions.
Biophysical J 168A, Suppl S.

Schriek S, Rückert C, Staiger D, Pistorius EK, Michel KP (2007)
Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803.
BMC Genomics 8, 437. doi: 10.1186/1471-2164-8-437
[BMC Genomics]

Schöning JC, Streitner C, Page DR, Hennig S, Uchida K, Wolf E, Furuya M, Staiger D (2007)
Autoregulation of the circadian slave oscillator component ATGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation.
Plant Journal 52, 1119-1130. doi: 10.1111/j.1365-313X.2007.03302.x

Pietsch D, Staiger D, Pistorius EK, Michel KP (2007)
Characterization of the putative iron sulfur protein IdiC (ORF5) in Synechococcus elongatus PCC 7942.
Photosynthesis Research 94, 91-108. doi: 10.1007/s11120-007-9222-9

Fu ZQ, Guo M, Jeong BR, Tian F, Elthon TE, Cerny RL, Staiger D, Alfano JR (2007)
A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity.
Nature 447, 284-288. doi: 10.1038/nature05737
see also:

Quelle: hka. F.A.Z. Frankfurter Allgemeine Zeitung, 08.06.2007, Nr. 130, 'Natur und Wissenschaft', Seite N2.

Nodop A, Suzuki I, Barsch A, Schröder A, Niehaus K, Staiger D, Pistorius EK, Michel K (2006)
Physiological and Molecular Characterization of a Synechocystis sp. PCC 6803 Mutant Lacking Histidine Kinase Slr1759 and Response Regulator Slr1760
J. Biosciences 61c, 865-878. doi: 10.1515/znc-2006-11-1215

Schöning JC, Staiger D (2006)
Being in time: the importance of posttranslational processes in circadian clocks.
BIO TECH international 18, 12-15.

Schöning JC, Streitner C, Staiger D (2006)
Clockwork Green - the circadian oscilator in Arabidopsis.
Biological Rhythm Research, Volume 37, pages 335 - 352

Staiger D (2005)
Am Puls des Lebens: Biologische Zeitmessung bei Arabidopsis thaliana.
BIOforum 28, 53-55.

Staiger D, Streitner C, Rudolf F, Huang X (2006)
Multiple and Slave Oscilators.
in: Endogenous Plant Rhythms, eds.:Hall A, McWatters H
Blackwell Publishing, 57-83.

Staiger D (2005)
Paradigmenwechsel im Verständnis der inneren Uhr.
Biologie in unserer Zeit

Schöning JC, Staiger D (2005)
At the pulse of time: Protein interactions determine the pace of circadian clocks.
FEBS Letters 579, 3246-3252. doi: 10.1016/j.febslet.2005.03.028

Staiger D (2005)
Post-transcriptional control in the Arabidopsis circadian system.
FEBS J, 272, 459.

Rudolf F, Wehrle F, Staiger D (2004)
Slave to the rhythm.
The Biochemist 26, 11-13.

Frohnmeyer H, Staiger D (2003)
Ultraviolet-B radiation (UV-B) mediated responses in plants - balancing damage and protection.
Plant Physiol 133,1420-1428. doi: 10.1104/pp.103.030049

Ziemienowicz A, Haasen D, Staiger D, Merkle T (2003)
Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7.
Plant Mol Biol 53, 201-212. doi: 10.1023/B:PLAN.0000009288.46713.1f

Staiger D, Zecca L, Wieczorek Kirk DA, Apel K, Eckstein L (2003)
The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA.
The Plant Journal 33, 361-371. doi: 10.1046/j.1365-313x.2003.01629.x

Staiger D, Allenbach L, Salathia N, Fiechter V, Davis SJ, Millar AJ, Chory J, Fankhauser C (2003)
The Arabidopsis SRR1 gene mediates phyB signaling and is important for normal circadian clock function.
Genes and Development 17, 256-268. doi: 10.1101/gad.244103

Staiger D (2003) Wie ist die innere Uhr molekular aufgebaut?
Bielefelder Universitätszeitung 213, 14-15.

Fankhauser C, Staiger D (2002)
Photoreceptors in Arabidopsis thaliana: light perception, signal transduction and entrainment of the endogenous clock.
Planta 216, 1-16. doi: 10.1007/s00425-002-0831-4

Staiger D (2002)
Chemical strategies for iron acquisition in plants.
Angewandte Chemie International Edition 41, 2259-2264. doi: 10.1002/1521-3773(20020703)41:13<2259::AID-ANIE2259>3.0.CO;2-I

Staiger D (2002)
Wie gelangt Eisen in die Pflanze?
Angewandte Chemie 114, 2363-2368.

Staiger D (2001)
Circadian rhythms in Arabidopsis: time for nuclear proteins
Planta 214, 334-344. doi: 10.1007/s004250100662

Staiger D (2001)
RNA-binding proteins and circadian rhythms in Arabidopsis thaliana.
Philosophical Transactions of the Royal Society 356, 1755-1759. doi: 10.1098/rstb.2001.0964

McWatters HG, Roden L, Staiger D (2001)
Picking out parallels: plant circadian clocks in context.
Philosophical Transactions of the Royal Society 356, 1735-1743. doi: 10.1098/rstb.2001.0936

Staiger D (2001)
Circadian clocks: CONSTANS lends its zinc finger
Trends in Plant Science 6, 293.

Membre N, Bernier F, Staiger D, Berna A (2000)
Arabidopsis thaliana germin-like proteins: common and specific features point to a variety of functions.
Planta 211, 354-354. doi: 10.1007/s004250000277

Staiger D (2000)
Wegbereiter der Pflanzenmolekularbiologie.
Biologie in unserer Zeit 30, 253.

Staiger D (2000)
Biologische Zeitmessung bei Pflanzen.
Biologie in unserer Zeit 30, 76-81.

Staiger D, Apel K (1999)
Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element.
Mol Gen Genet 261, 811-819. doi: 10.1007/s004380050025

Staiger D, Apel K, Trepp G (1999)
The Atger3 promoter confers circadian clock-regulated transcription with peak expression at the beginning of the night.
Plant Mol Biol 40, 873-882. doi: 10.1023/a:1006278030024

Staiger D, Heintzen C (1999)
The circadian system of Arabidopsis thaliana - forward and reverse genetic approaches.
Chronobiol Internat 16, 1-16. doi: 10.3109/07420529908998708

Fischer A, Staiger D (1999)
Immer im Rhythmus.
Tagesanzeiger 107, Ausgabe 208, 50.

Apel K, Melzer S, Staiger D (1999)
Biologische Zeit - Gene und die innere Uhr der Pflanzen.
ETH Bulletin 272, 26-29.

Staiger D, Heintzen C, Zecca L (1999)
The RNA-binding protein AtGRP7 is a component of a clock-regulated negative feedback circuit in Arabidopsis in: "News from the Plant Chronobiology Research"
Biological Rhythm Research 30, 237-248.

Heintzen C, Nater M, Apel, K, Staiger D (1997)
AtGRP7, a nuclear RNA-binding protein as a component of a circadian-regulated negative feedback loop in Arabidopsis thaliana.
Proc Natl Acad Sci USA 94, 8515-8520. doi: 10.1073/pnas.94.16.8515

Membre N, Berna A, Neuteling G, David A, David H, Staiger D, Vasquez JS, Raynal M, Delseny M, Bernier F (1997)
cDNA sequence, genomic organization and differential expression of three Arabidopsis genes for germin/oxalate oxidase-like proteins.
Plant Molec Biol 35, 459-469. doi: 10.1023/a:1005833028582

Staiger D (1996)
Clock-controlled transcripts in higher plants.
in: Vistas on Biorhythmicity, eds.: H. Greppin, R. Degli Agosti, M. Bonzon; Geneva. pp 119-133.

Heintzen C, Melzer S, Fischer R, Kappeler S, Apel K, Staiger D (1994)
A light- and temperature-entrained circadian clock controls expression of transcripts encoding nuclear proteins with homology to RNA-binding proteins in meristematic tissue.
The Plant Journal 6, 799-813. doi: 10.1046/j.1365-313x.1994.5060799.x

Heintzen C, Fischer R, Melzer S, Kappeler S, Apel K, Staiger D (1994)
Circadian oscillations of a transcript encoding a germin-like protein that is associated with cell walls in young leaves of the long-day plant Sinapis alba L..
Plant Physiol 106, 905-915. doi: 10.1104/pp.106.3.905

Staiger D, Kappeler S, Müller M, Apel K (1994)
The proteins encoded by two tapetum-specific transcripts, Satap35 and Satap44 , from Sinapis alba L. are localized in the exine cell wall layer of developing microspores.
Planta 192, 221-23. doi: 10.1007/BF00194456

Staiger D, Apel K (1993)
Molecular characterization of two cDNAs from Sinapis alba L. expressed specifically at an early stage of tapetum development.
The Plant Journal 4, 697-703. doi: 10.1046/j.1365-313x.1993.04040697.x

Körber H, Strizhov N, Staiger D, Feldwisch J, Olsson O, Sandberg G, Palme K, Schell J, Koncz C (1991)
T-DNA gene 5 of Agrobacterium modulates auxin response by autoregulated synthesis of a growth hormone antagonist in plants.
The EMBO J 10, 3983-3991. doi: 10.1002/j.1460-2075.1991.tb04973.x

Fritze K, Staiger D, Czaja I, Walden R, Schell J, Wing D (1991)
Developmental and UV light regulation of the snapdragon chalcone synthase promoter.
The Plant Cell 3, 893-905. doi: 10.1105/tpc.3.9.893

Staiger D, Becker F, Schell J, Koncz C, Palme K (1991)
Purification of tobacco nuclear proteins binding to a CACGTG motif of the chalcone synthase promoter by DNA affinity chromatography.
Eur J Biochem 199, 519-527. doi: 10.1111/j.1432-1033.1991.tb16150.x

Staiger D, Schell J, Palme K (1991)
Tobacco nuclear factor CG-1: DNA-protein crosslinking studies and copurification by differential sequence-specific affinity chromatography with a 21 kD polypeptide.
J Cell Biochem S 15 A, 157.

Staiger D, Kaulen H, Schell J (1990)
A nuclear factor recognizing a positive regulatory upstream element of the Antirrhinum majus chalcone synthase promoter.
Plant Physiol 93, 1347-1355. doi: 10.1104/pp.93.4.1347

Staiger D, Kaulen H, Schell J (1989)
A CACGTG motif of the Antirrhinum majus chalcone synthase promoter is recognized by an evolutionarily conserved nuclear protein.
Proc Natl Acad Sci USA 86, 6930-6943. doi: 10.1073/pnas.86.18.6930

Staiger D, Schell J (1989)
Identification and characterization of a trans-acting factor involved in the regulation of a chalcone synthase gene in tobacco.
J Cell Biochem S 13 A, M348.

Schreckenbach T, Werenskiold A-K, Staiger D, Allen RG, Bernier F, Lemieux G, Nations C, Palotta D (1986)
Gene expression during plasmodial differentiation.
in: The molecular Biology of Physarum polycephalum. eds.: Dove WF, Dee J, Hatano S, Haugli FB, Wohlfarth-Bottermann K-E; Plenum Publishing Corporation. pp 131-150. doi: 10.1007/978-1-4613-2203-0_7 [SpringerLink]

Neumann H, Gierl A, Tu J, Leibrock J, Staiger D, Zillig W (1983)
Organization of the genes for ribosomal RNA in Archaebacteria.
Mol Gen Genet 192, 66-72. doi: 10.1007/BF00327648

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